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VectorBase
All organisms An. gambiae Ae. aegypti I. scapularis C. quinquefasciatus P. humanus R. prolixus G. morsitans
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VectorBase Gene Expression
Software version: 2.0.19
Database release: VB-2011-10
Introduction

VectorBase maintains a repository for all published and about-to-be-published microarray experiments pertaining to invertebrate vector species. All data is processed through a standard normalisation and analysis pipeline, which enables side-by-side comparison of results from a variety of experimental designs. While we check carefully to ensure that the biological interpretations of the published and VectorBase analyses are qualitatively the same, we advise users to refer to the original authors' data and protocols if in any doubt.

Submit data

Contribute and have your microarray data displayed at VectorBase! Please see the submission guidelines for further details.

Custom/expert analysis

All expression data in VectorBase is held in BASE, a microarray data management and analysis system. Guest access to our BASE server is provided here, however this is read-only and no novel analysis can be performed. Contact the VectorBase help desk to ask for an account with more privileges.

Software

VectorBase has developed an API (upon which this web resource is built) called GESOL (Gene Expression Simple Object Layer). The source code is freely available under the GPL.

Help and documentation

Contextual help is provided through mouse-over "tooltips" in many places where you might expect some explanation. Click on the "More info." link in the yellow tooltip popup window to jump to the relevant point in the online user manual for extra helpful information.

Download
Genome browser

You may click through to gene expression reports from the VectorBase genome browser. On gene, transcript and protein pages there is a "Gene expression summary" link in the left hand menu. In ContigView (e.g. here), make sure you activate the microarray feature tracks.

Search

Example queries: berghei, CLIPA*, Affymetrix, AGAP007000, development*

Note: A search box is provided on all gene expression content pages (top left).

Search guide

Browse
Expression Maps

Anopheles gambiae

Aedes aegypti

Go directly to
Gene or gene symbol
e.g.: AGAP001111
Reporter
e.g.: NAP1-P97-D-01
Experiment
Microarray

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ND Ensembl IMBB Harvard Imperial College UNM